Journal
Liggins, L., Arranz, V., Braid, HE., Carmelet-Rescan, D., Elleouet, J., Egorova, E., . . . Stewart, LC. (2022). The future of molecular ecology in Aotearoa New Zealand: an early career perspective.
Journal of the Royal Society of New Zealand. 52(S1), 92-115
[Journal article]Authored by: Aguirre-Davies, J., Arranz Martinez, V., Hills, S., Liggins, L.Read Online:

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Arranz, V., Liggins, L., & Aguirre, JD. (2022). Metabarcoding hyperdiverse kelp holdfast communities on temperate reefs: An experimental approach to inform future studies.
Environmental DNA. 4(3), 492-509
[Journal article]Authored by: Aguirre-Davies, J., Arranz Martinez, V., Liggins, L.Read article at Massey Research Online:

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Liggins, L., Kilduff, L., Trnski, T., Delrieu-Trottin, E., Carvajal, JI., Arranz, V., . . . Aguirre, JD. (2022). Morphological and genetic divergence supports peripheral endemism and a recent evolutionary history of Chrysiptera demoiselles in the subtropical South Pacific.
Coral Reefs. 41(3), 797-812
[Journal article]Authored by: Aguirre-Davies, J., Arranz Martinez, V., Liggins, L.Read article at Massey Research Online:

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Kim, JJH., Liggins, L., & Aguirre, JD. (2021). Social environment mediates habitat shifts in a range-restricted giant limpet.
Marine Ecology Progress Series. 666, 89-98
[Journal article]Authored by: Aguirre-Davies, J., Liggins, L.Read Online:

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Dugand, RJ., Aguirre, JD., Hine, E., Blows, MW., & McGuigan, K. (2021). The contribution of mutation and selection to multivariate quantitative genetic variance in an outbred population of Drosophila serrata.
Proceedings of the National Academy of Sciences of the United States of America. 118(31)
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Muir, PR., Done, T., & Aguirre, JD. (2021). High regional and intrageneric variation in susceptibility to mass bleaching in Indo-Pacific coral species.
Global Ecology and Biogeography. 30(9), 1889-1898
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Middleton, I., Aguirre, JD., Trnski, T., Francis, M., Duffy, C., & Liggins, L. (2021). Introduced alien, range extension or just visiting? Combining citizen science observations and expert knowledge to classify range dynamics of marine fishes.
Diversity and Distributions. 27(7), 1278-1293
[Journal article]Authored by: Aguirre-Davies, J., Liggins, L.Read article at Massey Research Online:

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Strain, EMA., Steinberg, PD., Vozzo, M., Johnston, EL., Abbiati, M., Aguilera, MA., . . . Bishop, MJ. (2021). A global analysis of complexity–biodiversity relationships on marine artificial structures.
Global Ecology and Biogeography. 30(1), 140-153
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Walter, GM., Richards, TJ., Wilkinson, MJ., Blows, MW., Aguirre, JD., & Ortiz-Barrientos, D. (2020). Loss of ecologically important genetic variation in late generation hybrids reveals links between adaptation and speciation.
Evolution Letters. 4(4), 302-316
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Arranz, V., Pearman, WS., Aguirre, JD., & Liggins, L. (2020). MARES, a replicable pipeline and curated reference database for marine eukaryote metabarcoding.
Scientific Data. 7(1)
[Journal article]Authored by: Aguirre-Davies, J., Arranz Martinez, V., Liggins, L.Read article at Massey Research Online:

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Liggins, L., Sweatman, JA., Trnski, T., Duffy, CAJ., Eddy, TD., & Aguirre, JD. (2020). Natural history footage provides new reef fish biodiversity information for a pristine but rarely visited archipelago.
Scientific reports. 10(1), 3159
[Journal article]Authored by: Aguirre-Davies, J., Liggins, L.Read Online:

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Peters, KJ., Evans, C., Aguirre, JD., & Kleindorfer, S. (2019). Genetic admixture predicts parasite intensity: Evidence for increased hybrid performance in Darwin's tree finches.
Royal Society Open Science. 6(4)
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Muir, PR., Marshall, PA., Abdulla, A., & Aguirre, JD. (2018). Erratum: Correction to 'Species identity and depth predict bleaching severity in reef-building corals: shall the deep inherit the reef' (Proceedings. Biological sciences (2017) 284 1864 PII: 20172719).
Proceedings. Biological sciences. 285(1871)
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

Webb, W., Brunton, DH., Aguirre, JDAVID., Thomas, D., Valcu, M., & Dale, J. (2016). Female song occurs in songbirds with more elaborate female coloration and reduced sexual dichromatism.
Frontiers in Ecology and Evolution. 4, 1-8
[Journal article]Authored by: Aguirre-Davies, J., Brunton, D., Dale, J.Read article at Massey Research Online:

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Walter, GM., Wilkinson, MJ., Aguirre, JD., Blows, MW., & Ortiz-Barrientos, D. (2018). Environmentally induced development costs underlie fitness tradeoffs.
Ecology. 99(6), 1391-1401
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Walter, GM., Aguirre, JD., Blows, MW., & Ortiz-Barrientos, D. (2018). Evolution of genetic variance during adaptive radiation.
American Naturalist. 191(4), E108-E128
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Muir, PR., Marshall, PA., Abdulla, A., & Aguirre, JD. (2017). Species identity and depth predict bleaching severity in reef-building corals: Shall the deep inherit the reef?.
Proceedings of the Royal Society B: Biological Sciences. 284(1864)
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Muir, PR., Wallace, CC., Done, T., & Aguirre, JD. (2016). Response to letter regarding "Limited Scope for Latitudinal Extension of Reef Corals".
Frontiers of Biogeography. 8(4)
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Pearson, S., Windupranata, W., Pranowo, SW., Putri, A., Ma, Y., Vila-Concejo, A., . . . Arvanitidis, C. (2016). Conflicts in some of the World harbours: what needs to happen next?.
Maritime Studies. 15(1)
[Journal article]Authored by: Aguirre-Davies, J., Smith, A.Read Online:

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Walter, GM., Wilkinson, MJ., James, ME., Richards, TJ., Aguirre, JD., & Ortiz-Barrientos, D. (2016). Diversification across a heterogeneous landscape.
Evolution; international journal of organic evolution. 70(9), 1979-1992
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Webb, WH., Brunton, DH., Aguirre, JD., Thomas, DB., Valcu, M., & Dale, J. (2016). Female song occurs in songbirds with more elaborate female coloration and reduced sexual dichromatism.
Frontiers in Ecology and Evolution. 4(MAR)
[Journal article]Authored by: Aguirre-Davies, J., Dale, J., Thomas, D., Webb, W.Read Online:

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Aguirre, JD., Blows, MW., & Marshall, DJ. (2016). Genetic compatibility underlies benefits of mate choice in an external fertilizer.
American Naturalist. 187(5), 647-657
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Aguirre, JD., Bollard-Breen, B., Cameron, M., Constantine, R., Duffy, CAJ., Dunphy, B., . . . Wilson, R. (2016). Loved to pieces: Toward the sustainable management of the Waitematā Harbour and Hauraki Gulf.
Regional Studies in Marine Science. 8, 220-233
[Journal article]Authored by: Aguirre-Davies, J., Liggins, L., Smith, A., Thomas, D.Read Online:

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McGuigan, K., Aguirre, JD., & Blows, MW. (2015). Simultaneous estimation of additive and mutational genetic variance in an outbred population of drosophila serrata.
Genetics. 201(3), 1239-1251
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Muir, PR., Wallace, CC., Done, T., & Aguirre, JD. (2015). Limited scope for latitudinal extension of reef corals.
Science. 348(6239), 1135-1138
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Aguirre, JD., Blows, MW., & Marshall, DJ. (2014). The genetic covariance between life cycle stages separated by metamorphosis.
Proceedings. Biological sciences / The Royal Society. 281(1788), 20141091-20141091
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Aguirre, JD., Hine, E., McGuigan, K., & Blows, MW. (2014). Comparing G: Multivariate analysis of genetic variation in multiple populations.
Heredity. 112(1), 21-29
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Rius, M., Potter, EE., Aguirre, JD., & Stachowicz, JJ. (2014). Mechanisms of biotic resistance across complex life cycles.
Journal of Animal Ecology. 83(1), 296-305
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Aguirre, JD., Miller, SH., Morgan, SG., & Marshall, DJ. (2013). Relatedness affects the density, distribution and phenotype of colonisers in four sessile marine invertebrates.
Oikos. 122(6), 881-888
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Aguirre, JD., & McNaught, DC. (2013). Habitat complexity mediates predation of juvenile abalone by starfish.
Marine Ecology Progress Series. 487, 101-111
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Aguirre, JD., & Marshall, DJ. (2012). Genetic diversity increases population productivity in a sessile marine invertebrate.
Ecology. 93(5), 1134-1142
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Aguirre, JD., & Marshall, DJ. (2012). Does genetic diversity reduce sibling competition?.
Evolution. 66(1), 94-102
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Delcourt, M., Blows, MW., Aguirre, JD., & Rundle, HD. (2012). Evolutionary optimum for male sexual traits characterized using the multivariate Robertson-Price identity.
Proceedings of the National Academy of Sciences of the United States of America. 109(26), 10414-10419
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Aguirre, JD., & McNaught, DC. (2012). Ontogenetic variability in the habitat associations of haliotis iris in central new zealand.
Marine and Freshwater Research. 63(9), 751-761
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Aguirre, JD., & McNaught, DC. (2011). Habitat modification affects recruitment of abalone in central New Zealand.
Marine Biology. 158(3), 505-513
[Journal article]Authored by: Aguirre-Davies, J.Read Online:

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Conference
Aguirre, JD., Liggins, LJ., & Muir,, PR. (2016). Doing whatever it takes to survive: examining morphological divergence in high-latitude, reef-building corals. In E. Golder, & A. Connell (Eds.)
Proceedings of Kermadec – Discoveries and Connections. (pp. 61 - 63). : Kermadec – Discoveries and Connections
[Conference Paper in Published Proceedings]Authored by: Aguirre-Davies, J., Liggins, L.
Liggins, LJ., Treml,, E., Aguirre, JD., & Trnski,, T. (2016). A building biodiversity story for the shallow marine biodiversity of the Kermadec Archipelago. In E. Golder,, & A. Connell, (Eds.)
Proceedings of Kermadec – Discoveries and Connections. (pp. 58 - 60). : Kermadec – Discoveries and Connections
[Conference Paper in Published Proceedings]Authored by: Aguirre-Davies, J., Liggins, L.Contributed to by: Aguirre-Davies, J.
Aguirre, JD., Liggins, LJ., & Muir,, PR. (2016, April). Doing whatever it takes to survive: examining morphological divergence in high-latitude, reef-building corals. Presented at
Kermadec – Discoveries and Connections. Wellington, New Zealand.
[Conference Oral Presentation]Authored by: Aguirre-Davies, J.
Aguirre, JD., Blom,, W., Landers,, T., & Anderson, MJ. (2016, June). Trait variability in a foundation kelp drives variability in the distribution of biodiversity on temperate reefs. Presented at
International Temperate Reef Society Conference. Pisa, Italy.
[Conference Oral Presentation]Authored by: Aguirre-Davies, J.
Aguirre, JD., Blom, W., Landers, T., & Anderson, MJ. (2016, June). Eco-evolutionary Dynamics in a marine ecosystem engineer. Presented at
Evolution. Austin, Texas, United States of America.
[Conference Oral Presentation]Authored by: Aguirre-Davies, J.
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Aguirre, JD., Muir, PR., Wallace, CC., & Done, T. (2015, July). Limited scope for latitudinal extension of reef corals. Presented at
New Zealand Marine Science Society
[Conference Oral Presentation]Authored by: Aguirre-Davies, J.
Aguirre, JD., Blows,, MW., & Marshall, DJ. (2015, August). Genetic compatibility underlies benefits of mate choice in an external fertilizer. Presented at
European Society for Evolutionary Biology. Lausanne, Switzerland.
[Conference Oral Presentation]Authored by: Aguirre-Davies, J.
Aguirre, JD., Blows, MW., & Marshall, DJ. (2014, June). Partitioning additive and nonadditive genetic effects on offspring quality in a broadcast spawning marine invertebrate. Presented at
Evolution
[Conference Oral Presentation]Authored by: Aguirre-Davies, J.
Aguirre, JD., MIller, SH., Morgan, SG., & Marshall, DJ. (2013, November). Genetic diversity influences productivity in marine invertebrate populations. Presented at
Ecology Across the Tasman. Auckland, New Zealand.
[Conference Oral Presentation]Authored by: Aguirre-Davies, J.
Rius, M., Potter, EE., Aguirre, JD., & Stachowicz, JJ. (2012, August). Shifting mechanisms biotic resistance across multiple life-history stages reduce the abundance of a non-indigenous marine invertebrate. Presented at
Ecological Society of America
[Conference Oral Presentation]Authored by: Aguirre-Davies, J.Contributed to by: Aguirre-Davies, J.
Aguirre, JD., Blows, MW., & Marshall, DJ. (2011, August). Eggs choose the sperm that produce the best quality offspring. Presented at
European Society for Evolutionary Biology
[Conference Oral Presentation]Authored by: Aguirre-Davies, J.