Journal
Collis, RM., Biggs, PJ., Midwinter, AC., Browne, AS., Wilkinson, DA., Irshad, H., . . . Cookson, AL. (2020). Genomic epidemiology and carbon metabolism of Escherichia coli serogroup O145 reflect contrasting phylogenies..
PLoS One. 15(6), e0235066
[Journal article]Authored by: Biggs, P., French, N., Midwinter, A.Read Online:
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Bloomfield, S., Wilkinson, D., Rogers, L., Biggs, P., French, N., Mohan, V., . . . Midwinter, A. (2020). Campylobacter novaezeelandiae sp. nov., isolated from birds and water in New Zealand..
Int J Syst Evol Microbiol.
[Journal article]Authored by: Biggs, P., French, N.Read Online:
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Le, VVH., Biggs, PJ., Wheeler, D., Davies, IG., & Rakonjac, J. (2020). Novel mechanisms of TolC-independent decreased bile-salt susceptibility in Escherichia coli.
FEMS microbiology letters. 367(10)
[Journal article]Authored by: Biggs, P., Rakonjac, J.Read Online:
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Haviernik, J., Dawson, K., Anderson, T., Murdoch, D., Chambers, S., Biggs, P., . . . Slow, S. (2020). Complete genome sequence of a legionella longbeachae serogroup 2 isolate derived from a patient with Legionnaires’ disease.
Microbiology Resource Announcements. 9(5)
[Journal article]Authored by: Biggs, P.Read Online:
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Bojanić, K., Midwinter, AC., Acke, E., Marshall, JC., Cornelius, AJ., & Biggs, PJ. (2020). Draft genome sequences of eight strains of campylobacter helveticus isolated from cats and a dog in New Zealand.
Microbiology Resource Announcements. 9(5)
[Journal article]Authored by: Biggs, P., Marshall, J., Midwinter, A.Read Online:
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Angelin-Bonnet, O., Biggs, PJ., Baldwin, S., Thomson, S., & Vignes, M. (2020). sismonr: simulation of in silico multi-omic networks with adjustable ploidy and post-transcriptional regulation in R.
Bioinformatics (Oxford, England). 36(9), 2938-2940
[Journal article]Authored by: Biggs, P., Vignes, M.Read Online:
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Taylor, MA., Robertson, AW., Biggs, PJ., Richards, KK., Jones, DF., & Parkar, SG. (2019). The effect of carbohydrate sources: Sucrose, invert sugar and components of mānuka honey, on core bacteria in the digestive tract of adult honey bees (Apis mellifera).
PLoS ONE. 14(12)
[Journal article]Authored by: Biggs, P., Robertson, A.Read Online:
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Wilkinson, DA., Rogers, LE., Fayaz, A., Akhter, RN., Biggs, PJ., French, NP., . . . Midwinter, AC. (2019). Draft whole-genome sequences of Campylobacter strains isolated from brushtail possums in New Zealand.
Microbiology Resource Announcements. 8(47)
[Journal article]Authored by: Biggs, P., Fayaz, A., French, N., Midwinter, A.Read Online:
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French, NP., Zhang, J., Carter, GP., Midwinter, AC., Biggs, PJ., Dyet, K., . . . Williamson, DA. (2019). Genomic analysis of fluoroquinolone- And tetracycline-resistant campylobacter jejuni sequence type 6964 in humans and poultry, New Zealand, 2014-2016.
Emerging Infectious Diseases. 25(12), 2226-2234
[Journal article]Authored by: Biggs, P., Fayaz, A., French, N., Midwinter, A., Zhang, J.Read Online:
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Franz, E., Rotariu, O., Lopes, BS., Bono, JL., Laing, C., Gannon, V., . . . Strachan, NJC. (2019). Reply to Baba and Kanamori.
Clinical Infectious Diseases. ,
[Journal article]Authored by: Biggs, P., French, N.Read Online:
Guerrero, FD., Bendele, KG., Ghaffari, N., Guhlin, J., Gedye, KR., Lawrence, KE., . . . Tompkins, DM. (2019). The Pacific Biosciences de novo assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Haemaphysalis longicornis Neumann, 1901.
Data in Brief. 27
[Journal article]Authored by: Biggs, P., Gedye, K., Lawrence, K., Pomroy, W.Read Online:
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Van Hung Le, V., Davies, IG., Moon, CD., Wheeler, D., Biggs, PJ., & Rakonjac, J. (2019). Novel 5-nitrofuran-activating reductase in Escherichia coli.
Antimicrobial Agents and Chemotherapy. 63(11)
[Journal article]Authored by: Biggs, P., Rakonjac, J.Read Online:
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Cookson, AL., Lacher, DW., Scheutz, F., Wilkinson, DA., Biggs, PJ., Marshall, JC., . . . Brightwell, G. (2019). GndDb, a Database of Partial gnd Sequences to Assist with Analysis of Escherichia coli Communities Using High-Throughput Sequencing.
Microbiology Resource Announcements. 8(33)
[Journal article]Authored by: Biggs, P., Marshall, J.Read Online:
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Bloomfield, S., Vaughan, T., Benschop, J., Marshall, J., Hayman, D., Biggs, P., . . . French, N. (2019). Investigation of the validity of two Bayesian ancestral state reconstruction models for estimating Salmonella transmission during outbreaks.
[Journal article]Authored by: Biggs, P.Read Online:
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Bloomfield, S., Vaughan, T., Benschop, J., Marshall, J., Hayman, D., Biggs, P., . . . French, N. (2019). Investigation of the validity of two Bayesian ancestral state reconstruction models for estimating Salmonella transmission during outbreaks.
PLoS ONE. 14(7)
[Journal article]Authored by: Benschop, J., Biggs, P., French, N., Hayman, D., Marshall, J.Read Online:
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Visnovska, T., Biggs, PJ., Schmeier, S., Frizelle, FA., & Purcell, RV. (2019). Metagenomics and transcriptomics data from human colorectal cancer.
Scientific data. 6(1), 116
[Journal article]Authored by: Biggs, P., Schmeier, S.Read Online:
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Zhang, D., Palmer, J., Teh, KH., Biggs, P., & Flint, S. (2019). 16S rDNA high-throughput sequencing and MALDI-TOF MS are complementary when studying psychrotrophic bacterial diversity of raw cows' milk.
International Dairy Journal. 97, 86-91
[Journal article]Authored by: Biggs, P., Flint, S., Palmer, J.Read Online:
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Wilkinson, DA., Midwinter, AC., Kwan, E., Bloomfield, SJ., French, NP., & Biggs, PJ. (2019). Draft whole-genome sequences of three isolates of a novel strain of a Campylobacter sp. Isolated from New Zealand birds and water.
Microbiology Resource Announcements. 8(18)
[Journal article]Authored by: Biggs, P., French, N., Midwinter, A.Read Online:
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Brauning, R., Plain, K., Gautam, M., Russell, T., Carolina Correa, C., Biggs, P., . . . Price-Carter, M. (2019). Complete genome sequence of the telford type s strain of mycobacterium avium subsp. Paratuberculosis.
Microbiology Resource Announcements. 8(11)
[Journal article]Authored by: Biggs, P.Read Online:
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Le, VVH., Bruce, I., Biggs, PJ., & Rakonjac, J. (2019). Draft genome sequence of a canine uropathogenic Escherichia coli strain isolated in New Zealand.
Microbiology Resource Announcements. 8(10)
[Journal article]Authored by: Biggs, P., Rakonjac, J.Read Online:
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Shepherd, LD., Frericks, J., Biggs, PJ., & de Lange, PJ. (2019). Phylogeography of the endemic New Zealand tree Entelea arborescens (whau; Malvaceae).
New Zealand Journal of Botany. 57(3), 154-168
[Journal article]Authored by: Biggs, P.Read Online:
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Browne, AS., Biggs, PJ., Wilkinson, DA., Cookson, AL., Midwinter, AC., Bloomfield, SJ., . . . French, NP. (2019). Use of genomics to investigate historical importation of shiga toxin-producing Escherichia coli serogroup O26 and nontoxigenic variants into New Zealand.
Emerging Infectious Diseases. 25(3), 489-500
[Journal article]Authored by: Benschop, J., Biggs, P., French, N., Marshall, J., Midwinter, A.Read Online:
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Wheeler, NE., Blackmore, T., Reynolds, AD., Midwinter, AC., Marshall, J., French, NP., . . . Biggs, PJ. (2019). Genomic correlates of extraintestinal infection are linked with changes in cell morphology in Campylobacter jejuni.
Microbial Genomics. 5(2)
[Journal article]Authored by: Biggs, P., French, N., Marshall, J., Midwinter, A., Savoian, M.Read Online:
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Angelin-Bonnet, O., Biggs, PJ., & Vignes, M. (2019). Gene Regulatory Networks: A Primer in Biological Processes and Statistical Modelling. 1883, 347-383
[Journal article]Authored by: Biggs, P., Vignes, M.Read Online:
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Bojanić, K., Midwinter, AC., Marshall, JC., Biggs, PJ., & Acke, E. (2019). Isolation of emerging Campylobacter species in working farm dogs and their frozen home-killed raw meat diets.
Journal of Veterinary Diagnostic Investigation. 31(1), 23-32
[Journal article]Authored by: Biggs, P., Marshall, J., Midwinter, A.Read Online:
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Collis, RM., Burgess, SA., Biggs, PJ., Midwinter, AC., French, NP., Toombs-Ruane, L., . . . Cookson, AL. (2019). Extended-spectrum beta-lactamase-producing enterobacteriaceae in dairy farm environments: A New Zealand perspective.
Foodborne Pathogens and Disease. 16(1), 5-22
[Journal article]Authored by: Biggs, P., Burgess, S., French, N., Midwinter, A.Read Online:
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Franz, E., Rotariu, O., Lopes, BS., Macrae, M., Bono, JL., Laing, C., . . . Strachan, NJC. (2019). Phylogeographic Analysis Reveals Multiple International transmission Events Have Driven the Global Emergence of Escherichia coli O157:H7.
Clinical Infectious Diseases. 69(3), 428-437
[Journal article]Authored by: Biggs, P., French, N.Read Online:
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Pinpimai, K., Roe, WD., Biggs, PJ., & Dittmer, KE. (2018). Draft Whole-Genome Sequences of Seven Isolates of Klebsiella pneumoniae from New Zealand Sea Lions.
Microbiology Resource Announcements. 7(20)
[Journal article]Authored by: Biggs, P., Dittmer, K., Roe, W.Read Online:
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Pinpimai, K., Roe, WD., Biggs, PJ., Dittmer, KE., & Michael, SA. (2018). Draft whole-genome sequences of five klebsiella pneumoniae isolates from the subantarctic islands of New Zealand.
Microbiology Resource Announcements. 7(20)
[Journal article]Authored by: Biggs, P., Dittmer, K., Roe, W.Read Online:
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Browne, AS., Midwinter, AC., Withers, H., Cookson, AL., Biggs, PJ., Marshall, JC., . . . French, NP. (2018). Molecular epidemiology of Shiga toxinproducing Escherichia coli (STEC) on New Zealand dairy farms: Application of a culture-independent assay and whole-genome sequencing.
Applied and Environmental Microbiology. 84(14)
[Journal article]Authored by: Benschop, J., Biggs, P., French, N., Marshall, J., Midwinter, A.Read Online:
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Browne, AS., Biggs, PJ., Elliott, A., Jaros, P., French, NP., & Midwintera, AC. (2018). Draft wholegenome sequences of three diarrheagenic Escherichia coli strains isolated from farmed deer in New Zealand.
Genome Announcements. 6(16)
[Journal article]Authored by: Biggs, P., French, N., Midwinter, A.Read Online:
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Slow, S., Anderson, T., Biggs, P., Kennedy, M., Murdoch, D., & Cree, S. (2018). Complete genome sequence of Legionella sainthelensi isolated from a patient with Legionnaires' disease.
Genome Announcements. 6(5)
[Journal article]Authored by: Biggs, P.Read Online:
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Bloomfeld, SJ., Midwinter, AC., Biggs, PJ., French, NP., Marshall, JC., Hayman, DTS., . . . Benschop, J. (2018). Long-term colonization by campylobacter jejuni within a human host: Evolution, antimicrobial resistance, and adaptation.
Journal of Infectious Diseases. 217(1), 103-111
[Journal article]Authored by: Benschop, J., Biggs, P., French, N., Hayman, D., Marshall, J., Midwinter, A.Read Online:
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Dixon, M., Flint, S., Palmer, J., Love, R., Biggs, P., & Beuger, A. (2018). Analysis of culturable and non-culturable bacteria and their potential to form biofilms in a primary treated dairy wastewater system.
Environmental Technology (United Kingdom). 39(17), 2185-2192
[Journal article]Authored by: Biggs, P., Flint, S., Love, R., Palmer, J.Read Online:
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Purcell, RV., Visnovska, M., Biggs, PJ., Schmeier, S., & Frizelle, FA. (2017). Distinct gut microbiome patterns associate with consensus molecular subtypes of colorectal cancer.
Scientific Reports. 7(1)
[Journal article]Authored by: Biggs, P., Schmeier, S.Read Online:
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Bulgarella, M., Biggs, PJ., De Lange, PJ., & Shepherd, LD. (2017). Isolation and Characterization of Microsatellite Loci from Arthropodium cirratum (Asparagaceae).
Applications in Plant Sciences. 5(8)
[Journal article]Authored by: Biggs, P.Read Online:
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Yan, J., Blair, HT., Liu, M., Li, W., He, S., Chen, L., . . . Dukkipati, VSR. (2017). Genome-wide detection of autosomal copy number variants in several sheep breeds using Illumina OvineSNP50 BeadChips.
Small Ruminant Research. 155, 24-32
[Journal article]Authored by: Biggs, P., Blair, H., Dittmer, K., Dukkipati, V., Garrick, D.Read Online:
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Grinberg, A., Biggs, PJ., Zhang, J., Ritchie, S., Oneroa, Z., O'Neill, C., . . . Coombs, GW. (2017). Genomic epidemiology of methicillin-susceptible Staphylococcus aureus across colonisation and skin and soft tissue infection.
Journal of Infection. 75(4), 326-335
[Journal article]Authored by: Biggs, P., Grinberg, A., Velathanthiri, N., Zhang, J.Read Online:
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Cornelius, AJ., Miller, WG., Lastovica, AJ., On, SLW., French, NP., Vandenberg, O., . . . Biggs, PJ. (2017). Complete genome sequence of Campylobacter concisus ATCC 33237<sup>T</sup> and draft genome sequences for an additional eight well-characterized C. concisus strains.
Genome Announcements. 5(29)
[Journal article]Authored by: Biggs, P., French, N.Read Online:
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Burgess, SA., Flint, SH., Lindsay, D., Cox, MP., & Biggs, PJ. (2017). Insights into the Geobacillus stearothermophilus species based on phylogenomic principles.
BMC Microbiology. 17(1)
[Journal article]Authored by: Biggs, P., Burgess, S., Cox, M., Flint, S.Read Online:
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Slow, S., Anderson, T., Miller, J., Singh, S., Murdoch, D., & Biggs, PJ. (2017). Complete genome sequence of a Legionella longbeachae serogroup 1 strain isolated from a patient with Legionnaires' disease.
Genome Announcements. 5(24)
[Journal article]Authored by: Biggs, P.Read Online:
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Bloomfield, SJ., Benschop, J., Biggs, PJ., Marshall, JC., Hayman, DTS., Carter, PE., . . . French, NP. (2017). Genomic analysis of salmonella enterica serovar Typhimurium DT160 associated with a 14-year outbreak, New Zealand, 1998–2012.
Emerging Infectious Diseases. 23(6), 906-913
[Journal article]Authored by: Benschop, J., Biggs, P., French, N., Hayman, D., Marshall, J., Midwinter, A.Read article at Massey Research Online:
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Cookson, AL., Biggs, PJ., Marshall, JC., Reynolds, A., Collis, RM., French, NP., . . . Brightwell, G. (2017). Culture independent analysis using gnd as a target gene to assess Escherichia coli diversity and community structure.
Scientific Reports. 7(1)
[Journal article]Authored by: Biggs, P., French, N., Marshall, J.Read article at Massey Research Online:
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Grange, ZL., Biggs, PJ., Rose, SP., Gartrell, BD., Nelson, NJ., & French, NP. (2017). Genomic Epidemiology and Management of Salmonella in Island Ecosystems Used for Takahe Conservation.
Microbial Ecology. 74(3), 735-744
[Journal article]Authored by: Biggs, P., French, N., Gartrell, B.Read Online:
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Vaughan, TG., Welch, D., Drummond, AJ., Biggs, PJ., George, T., & French, NP. (2017). Inferring ancestral recombination graphs from bacterial genomic data.
Genetics. 205(2), 857-870
[Journal article]Authored by: Biggs, P., French, N.Read Online:
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Bojanić, K., Midwinter, AC., Marshall, JC., Rogers, LE., Biggs, PJ., & Acke, E. (2017). Isolation of Campylobacter spp. from Client-Owned Dogs and Cats, and Retail Raw Meat Pet Food in the Manawatu, New Zealand.
Zoonoses and Public Health. 64(6), 438-449
[Journal article]Authored by: Biggs, P., Marshall, J., Midwinter, A.Read Online:
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Bojanić, K., Midwinter, AC., Marshall, JC., Rogers, LE., Biggs, PJ., & Acke, E. (2016). Variation in the limit-of-detection of the ProSpecT Campylobacter microplate enzyme immunoassay in stools spiked with emerging Campylobacter species.
Journal of Microbiological Methods. 127, 236-241
[Journal article]Authored by: Biggs, P., Marshall, J., Midwinter, A.Read Online:
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Morgan-Richards, M., Hills, SFK., Biggs, PJ., & Trewick, SA. (2016). Sticky genomes: Using NGS evidence to test hybrid speciation hypotheses.
PLoS ONE. 11(5)
[Journal article]Authored by: Biggs, P., Hills, S., Morgan-Richards, M., Trewick, S.Read article at Massey Research Online:
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Grange, ZL., Gartrell, BD., Biggs, PJ., Nelson, NJ., Anderson, M., & French, NP. (2016). Microbial Genomics of a Host-Associated Commensal Bacterium in Fragmented Populations of Endangered Takahe.
Microbial Ecology. 71(4), 1020-1029
[Journal article]Authored by: Anderson, M., Biggs, P., French, N., Gartrell, B.Read Online:
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Friedrich, A., Marshall, JC., Biggs, PJ., Midwinter, AC., & French, NP. (2016). Seasonality of Campylobacter jejuni isolates associated with human campylobacteriosis in the Manawatu region, New Zealand.
Epidemiology and Infection. 144(4), 820-828
[Journal article]Authored by: Biggs, P., French, N., Marshall, J., Midwinter, A.Read Online:
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Strachan, NJC., Rotariu, O., Lopes, B., Macrae, M., Fairley, S., Laing, C., . . . Forbes, KJ. (2015). Whole Genome Sequencing demonstrates that Geographic Variation of Escherichia coli O157 Genotypes Dominates Host Association.
Scientific Reports. 5
[Journal article]Authored by: Biggs, P., French, N.Read article at Massey Research Online:
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Burgess, SA., Cox, MP., Flint, SH., Lindsay, D., & Biggs, PJ. (2015). Draft genome sequences of three strains of Geobacillus stearothermophilus isolated from a milk powder manufacturing plant.
Genome Announcements. 3(5)
[Journal article]Authored by: Biggs, P., Burgess, S., Cox, M., Flint, S.Read Online:
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Fearnhead, P., Yu, S., Biggs, P., Holland, B., & French, N. (2015). Estimating the relative rate of recombination to mutation in bacteria from single-locus variants using composite likelihood methods.
Annals of Applied Statistics. 9(1), 200-224
[Journal article]Authored by: Biggs, P., French, N.Read Online:
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Grange, ZL., Gartrell, BD., Biggs, PJ., Nelson, NJ., Marshall, JC., Howe, L., . . . French, NP. (2015). Using a common commensal bacterium in endangered Takahe as a model to explore pathogen dynamics in isolated wildlife populations.
Conservation Biology. 29(5), 1327-1336
[Journal article]Authored by: Biggs, P., French, N., Gartrell, B., Howe, L., Marshall, J.Read Online:
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Gregory, SJ., Anderson, CWN., Camps-Arbestain, M., Biggs, PJ., Ganley, ARD., O'Sullivan, JM., . . . McManus, MT. (2015). Biochar in co-contaminated soil manipulates arsenic solubility and microbiological community structure, and promotes organochlorine degradation.
PLoS ONE. 10(4)
[Journal article]Authored by: Anderson, C., Biggs, P., Camps Arbestain, M.Read Online:
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Teh, BT., Linblad, K., Nord, B., Kytola, S., Schalling, M., Larsson, C., . . . Nicol, D. (1999). Familial testicular cancer: Lack of evidence for trinucleotide repeat expansions and association with PKD1 in one family [2].
Journal of Medical Genetics. 36(4), 348-349
[Journal article]Authored by: Biggs, P.Wooster, R., Bignell, G., Lancaster, J., Swift, S., Seal, S., Mangion, J., . . . Arason, A. (1996). Addendum: Identification of the breast cancer susceptibility gene BRCA2 (Nature (1995) 378 (789-792)).
Nature. 379(6567), 749
[Journal article]Authored by: Biggs, P.Altherr, MR., Auerbach, AD., Biggs, PO., Burn, TC., Breuning, MH., Peters, DJM., . . . Sood, R. (1996). Report of the fourth international workshop on human chromosome 16 mapping 1995 - Held on 12-14 November 1995 at the University of Leiden, The Netherlands.
CYTOGENETICS AND CELL GENETICS. 72(4), 271-285
[Journal article]Authored by: Biggs, P.Wooster, R., Bignell, G., Lancaster, J., Swift, S., Seal, S., Mangion, J., . . . Stratton, MR. (1996). Identification of the breast cancer susceptibility gene BRCA2 (vol 378, pg 789, 1995).
NATURE. 379(6567), 749-749
[Journal article]Authored by: Biggs, P.Read Online:
Warren, W., Biggs, PJ., Ei-baz, M., Ghoneim, MA., Stratton, MR., & Venitt, S. (1995). Mutations in the p53 gene in schistosomal bladder cancer: A study of 92 tumours from egyptian patients and a comparison between mutational spectra from schistosomal and non-schistosomal urothelial tumours.
Carcinogenesis. 16(5), 1181-1189
[Journal article]Authored by: Biggs, P.Read Online:
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Venitt, S., & Biggs, PJ. (1994). Radon, mycotoxins, p53, and uranium mining.
The Lancet. 343(8900), 795
[Journal article]Authored by: Biggs, P.Read Online:
Lindgreen, S., Umu, SU., Lai, ASW., Eldai, H., Liu, W., McGimpsey, S., . . . Gardner, PP. (2014). Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling.
PLoS Computational Biology. 10(10)
[Journal article]Authored by: Biggs, P.Read Online:
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Binney, BM., Biggs, PJ., Carter, PE., Holland, BM., & French, NP. (2014). Quantification of historical livestock importation into New Zealand 1860–1979.
New Zealand Veterinary Journal. 62(6), 309-314
[Journal article]Authored by: Biggs, P., French, N.Read Online:
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Prangle, D., Fearnhead, P., Cox, MP., Biggs, PJ., & French, NP. (2014). Semi-automatic selection of summary statistics for ABC model choice.
Statistical Applications in Genetics and Molecular Biology. 13(1), 67-82
[Journal article]Authored by: Biggs, P., Cox, M., French, N.Read Online:
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Han, J., Collins, LJ., Biggs, PJ., White, WT., & Penny, ED. (2013). Are Signature Proteins the Key to Evaluating Eukaryotic Phylogeny?.
Review of bioinformatics and biometrics. 2(2), 37-44 Retrieved from http://www.seipub.org/rbb/paperInfo.aspx?ID=6248
[Journal article]Authored by: Biggs, P.Read Abstract:
Grinberg, A., Biggs, PJ., Dukkipati, VSR., & George, TT. (2013). Extensive intra-host genetic diversity uncovered in Cryptosporidium parvum using Next Generation Sequencing.
Infection, Genetics and Evolution. 15, 18-24
[Journal article]Authored by: Biggs, P.Read Online:
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Ahmed, I., Matthews, PJ., Biggs, PJ., Naeem, M., Mclenachan, PA., & Lockhart, PJ. (2013). Identification of chloroplast genome loci suitable for high-resolution phylogeographic studies of Colocasia esculenta (L.) Schott (Araceae) and closely related taxa.
Molecular Ecology Resources. 13(5), 929-937
[Journal article]Authored by: Biggs, P., Lockhart, P., McLenachan, P.Read Online:
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Wang, J., McLenachan, PA., Biggs, PJ., Winder, LH., Schoenfeld, BIK., Narayan, VV., . . . Lockhart, PJ. (2013). Environmental bio-monitoring with high-throughput sequencing.
Briefings in Bioinformatics. 14(5), 575-588
[Journal article]Authored by: Biggs, P., Lockhart, P., McLenachan, P.Read Online:
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Goremykin, VV., Nikiforova, SV., Biggs, PJ., Zhong, B., Delange, P., Martin, W., . . . Lockhart, PJ. (2013). The evolutionary root of flowering plants.
Systematic Biology. 62(1), 50-61
[Journal article]Authored by: Biggs, P., Lockhart, P., McLenachan, P.Read Online:
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Grinberg, A., Biggs, PJ., Dukkipati, VSR., & George, TT. (2012). Extensive intra-host genetic diversity uncovered in Cryptosporidium parvum using Next Generation Sequencing.
Infection, Genetics and Evolution.
[Journal article]Authored by: Biggs, P., Dukkipati, V., Grinberg, A.Read Online:
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Ahmed, I., Biggs, PJ., Matthews, PJ., Collins, LJ., Hendy, MD., & Lockhart, PJ. (2012). Mutational dynamics of aroid chloroplast genomes.
Genome Biology and Evolution. 4(12), 1316-1323
[Journal article]Authored by: Biggs, P., Lockhart, P.Read Online:
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Miller, HC., Biggs, PJ., Voelckel, C., & Nelson, NJ. (2012). De novo sequence assembly and characterisation of a partial transcriptome for an evolutionarily distinct reptile, the tuatara (Sphenodon punctatus).
BMC Genomics. 13(1)
[Journal article]Authored by: Biggs, P.Read Online:
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Voelckel, C., Gruenheit, N., Biggs, P., Deusch, O., & Lockhart, P. (2012). Chips and tags suggest plant-environment interactions differ for two alpine Pachycladon species.
BMC Genomics. 13(1)
[Journal article]Authored by: Biggs, P., Lockhart, P.Read Online:
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Yu, S., Fearnhead, P., Holland, BR., Biggs, P., Maiden, M., & French, N. (2012). Estimating the relative roles of recombination and point mutation in the generation of single locus variants in Campylobacter jejuni and Campylobacter coli.
Journal of Molecular Evolution. 74(5-6), 273-280
[Journal article]Authored by: Biggs, P., French, N.Read Online:
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Dunowska, M., Biggs, PJ., Zheng, T., & Perrott, MR. (2012). Identification of a novel nidovirus associated with a neurological disease of the Australian brushtail possum (Trichosurus vulpecula).
Veterinary Microbiology. 156(3-4), 418-424
[Journal article]Authored by: Biggs, P., Dunowska, M., Perrott, M.Read Online:
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Zhong, B., Deusch, O., Goremykin, VV., Penny, D., Biggs, PJ., Atherton, RA., . . . Lockhart, PJ. (2011). Systematic error in seed plant phylogenomics.
Genome Biology and Evolution. 3(1), 1340-1348
[Journal article]Authored by: Biggs, P., Lockhart, P.Read Online:
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Biggs, PJ., Fearnhead, P., Hotter, G., Mohan, V., Collins-Emerson, J., Kwan, E., . . . French, NP. (2011). Whole-genome comparison of two campylobacter jejuni isolates of the same sequence type reveals multiple loci of different ancestral lineage.
PLoS ONE. 6(11)
[Journal article]Authored by: Biggs, P., Collins-Emerson, J., French, N.Read Online:
Read Abstract:
Skarnes, WC., Rosen, B., West, AP., Koutsourakis, M., Bushell, W., Iyer, V., . . . Bradley, A. (2011). A conditional knockout resource for the genome-wide study of mouse gene function.
Nature. 474(7351), 337-344
[Journal article]Authored by: Biggs, P.Read Online:
Read Abstract:
Cox, MP., Peterson, DA., & Biggs, PJ. (2010). SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data.
BMC Bioinformatics. 11
[Journal article]Authored by: Biggs, P., Cox, M.Read Online:
Read Abstract:
McComish, BJ., Hills, SFK., Biggs, PJ., & Penny, D. (2010). Index-free de novo assembly and deconvolution of mixed mitochondrial genomes.
Genome Biology and Evolution. 2(1), 410-424
[Journal article]Authored by: Biggs, P., Hills, S.Read Online:
Read Abstract:
Collins, LJ., Kurland, CG., Biggs, P., & Penny, D. (2009). The modern RNP world of eukaryotes.
Journal of Heredity. 100(5), 597-604
[Journal article]Authored by: Biggs, P.Read Online:
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Chen, XS., Collins, LJ., Biggs, PJ., & Penny, D. (2009). High Throughput Genome-Wide Survey of Small RNAs from the Parasitic Protists Giardia intestinalis and Trichomonas vaginalis.
GENOME BIOLOGY AND EVOLUTION. 1, 165-175
[Journal article]Authored by: Biggs, P.Read Online:
Read Abstract:
Adams, DJ., Biggs, PJ., Cox, T., Davies, R., Van Der Weyden, L., Jonkers, J., . . . Bradley, A. (2004). Mutagenic insertion and chromosome engineering resource (MICER).
Nature Genetics. 36(8), 867-871
[Journal article]Authored by: Biggs, P.Read Online:
Read Abstract:
Biggs, PJ., Vogel, H., Sage, M., Martin, LA., Donehower, LA., & Bradley, A. (2003). Allelic phasing of a mouse chromosome 11 deficiency influences p53 tumorigenicity.
Oncogene. 22(21), 3288-3296
[Journal article]Authored by: Biggs, P.Read Online:
Read Abstract:
Takahashi, M., Rapley, E., Biggs, PJ., Lakhani, SR., Cooke, D., Hansen, J., . . . Stratton, MR. (2000). Linkage and LOH studies in 19 cylindromatosis families show no evidence of genetic heterogeneity and refine the CYLD locus on chromosome 16q12-q13.
Human Genetics. 106(1), 58-65
[Journal article]Authored by: Biggs, P.Read Online:
Read Abstract:
Rapley, EA., Crockford, GP., Teare, D., Biggs, P., Seal, S., Barfoot, R., . . . Bishop, DT. (2000). Localization to Xq27 of a susceptibility gene for testicular germ-cell tumours.
Nature Genetics. 24(2), 197-200
[Journal article]Authored by: Biggs, P.Read Online:
Read Abstract:
Pershouse, M., Li, J., Yang, C., Su, H., Brundage, E., Di, W., . . . Chinault, AC. (2000). BAC contig from a 3-cM region of mouse chromosome 11 surrounding Brca1.
Genomics. 69(1), 139-142
[Journal article]Authored by: Biggs, P.Read Online:
Read Abstract:
Bignell, GR., Warren, W., Seal, S., Takahashi, M., Rapley, E., Barfoot, R., . . . Stratton, MR. (2000). Identification of the familial cylindromatosis tumour-suppressor gene.
Nature Genetics. 25(2), 160-165
[Journal article]Authored by: Biggs, P.Read Online:
Read Abstract:
Eeles, RA., Durocher, F., Edwards, S., Teare, D., Badzioch, M., Hamoudi, R., . . . Foulkes, WD. (1998). Linkage analysis of chromosome 1q markers in 136 prostate cancer families.
American Journal of Human Genetics. 62(3), 653-658
[Journal article]Authored by: Biggs, P.Read Online:
Read Abstract:
Bishop, DT., Rapley, E., Tucker, K., Collins, F., Donald, J., Friedlander, M., . . . Heimdal, K. (1998). Candidate regions for testicular cancer susceptibility genes: The International Testicular Cancer Linkage Consortium.
APMIS. 106(1), 64-72
[Journal article]Authored by: Biggs, P.Read Online:
Read Abstract:
Biggs, PJ., & Bradley, A. (1998). A step toward genotype-based therapeutic regimens for breast cancer in patients with BRCA2 mutations?.
Journal of the National Cancer Institute. 90(13), 951-953
[Journal article]Authored by: Biggs, P.Read Online:
Bignell, GR., Canzian, F., Shayeghi, M., Stark, M., Shugart, YY., Biggs, P., . . . Foulkes, WD. (1997). Familial nontoxic multinodular thyroid goiter locus maps to chromosome 14q but does not account for familial nonmedullary thyroid cancer.
American Journal of Human Genetics. 61(5), 1123-1130
[Journal article]Authored by: Biggs, P.Read Online:
Read Abstract:
Biggs, PJ., Chapman, P., Lakhani, SR., Burn, J., & Stratton, MR. (1996). The cylindromatosis gene (cyld1) on chromosome 16q may be the only tumour suppressor gene involved in the development of cylindromas.
Oncogene. 12(6), 1375-1377
[Journal article]Authored by: Biggs, P.Read Abstract:
Wooster, R., Bignell, G., Lancaster, J., Swift, S., Seal, S., Mangion, J., . . . Stratton, MR. (1995). Identification of the breast cancer susceptibility gene BRCA2.
Nature. 378(6559), 789-792
[Journal article]Authored by: Biggs, P.Read Online:
Read Abstract:
Biggs, PJ., Wooster, R., Ford, D., Chapman, P., Mangion, J., Quirk, Y., . . . Stratton, MR. (1995). Familial cylindromatosis (turban tumour syndrome) gene localised to chromosome 16q12–q13: evidence for its role as a tumour suppressor gene.
Nature Genetics. 11(4), 441-443
[Journal article]Authored by: Biggs, P.Read Online:
Read Abstract:
Knox, RJ., Friedlos, F., Biggs, PJ., Flitter, WD., Gaskell, M., Goddard, P., . . . Jarman, M. (1993). Identification, synthesis and properties of 5-(aziridin-1-YL)-2-nitro-4-nitrosobenzamide, A novel DNA crosslinking agent derived from CB1954.
Biochemical Pharmacology. 46(5), 797-803
[Journal article]Authored by: Biggs, P.Read Online:
Read Abstract:
Biggs, PJ., Warren, W., Venitt, S., & Stratton, MR. (1993). Does a genotoxic carcinogen contribute to human breast cancer?: The value of mutational spectra in unravelling the aetiology of cancer.
Mutagenesis. 8(4), 275-283
[Journal article]Authored by: Biggs, P.Read Online:
Read Abstract:
Friedlos, F., Biggs, PJ., Abrahamson, JA., & Knox, RJ. (1992). Potentiation of CB 1954 cytotoxicity by reduced pyridine nucleotides in human tumour cells by stimulation of DT diaphorase activity.
Biochemical Pharmacology. 44(9), 1739-1743
[Journal article]Authored by: Biggs, P.Read Online:
Read Abstract:
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Conference
Guerrero, FD., Guhlin, J., Gedye, KR., Lawrence, K., Dearden, PK., Harrop, TWR., . . . Tompkins, DM. (2019). The de novo assembled and annotation genome of the New Zealand cattle tick, Haemaphysalis longicornis Neumann, 1901. , New Zealand Society for Parasitology Annual Meeting No.47
[Conference Abstract]Authored by: Biggs, P., Gedye, K., Lawrence, K., Pomroy, W.Read Abstract:
Coker, S., Pomroy, W., McInnes, K., Howe, L., Vallee, E., Biggs, P., . . . Morgan, K. (2019). Morphological description of coccidia in Haast tokoeka (Apteryx australis "Haast"). , New Zealand Society for Parasitology Annual Meeting No.47
[Conference Abstract]Authored by: Biggs, P., Howe, L., Pomroy, W., Vallee, E.Read Abstract:
Taylor, MA., Robertson, A., Biggs, P., Richards, KK., & Parkar, S. (2019).
The effect of carbohydrate sources: sucrose, invert sugar and components of manuka honey on bacteria within the digestive tract of honeybees. Poster session presented at the meeting of 46th Apidmondia - International Agricultural Congress. Montreal, Canada
[Conference Poster]Authored by: Biggs, P., Robertson, A.Read Abstract:
Angelin-Bonnet, O., Biggs, PJ., & Vignes, M.The sismonr Package: Simulation of in Silico Multi-Omic Networks in R.
Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. (pp. 2729 - 2731).
[Conference]Authored by: Biggs, P., Vignes, M.Read Online:
Read Abstract:
Burgess, S., Toombs-Ruane, L., Biggs, P., Midwinter, A., & Benschop, J. (2018).
Urban waterways a vehicle for the spread of antimicrobial resistant E. coli ?. Poster session presented at the meeting of NZMS-NZSBMB Joint Annual Conference 2018
[Conference Poster]Authored by: Benschop, J., Biggs, P., Burgess, S., Midwinter, A.view more...
Heydari, A., Kim, N., Bromhead, C., Horswell, J., Gielen, G., Biggs, P., . . . Palmer, B. (2018).
Heavy Metals and Antibiotic Resistance Diversity Investigation in Soil Bacteria Using 16SrDNA Sequencing and Specific PCR. Poster session presented at the meeting of Joint NZMS & NZSBMB Annual Conference. University of Otago, Dunedin, New Zealand
[Conference Poster]Authored by: Biggs, P., Bromhead, C., Kim, N., Palmer, B.Read Abstract:
Wilkinson, DA., O'Donnell, AJ., Akhter, RN., Fayaz, A., MacK, HJ., Rogers, LE., . . . Midwinter, AC. (2018).
Updating the genomic taxonomy and epidemiology of Campylobacter hyointestinalis.
[Conference Poster]Authored by: Biggs, P., Fayaz, A., French, N., Midwinter, A.Read Abstract:
Flint, SH., Zhang, D., Palmer, J., Lindsay, D., Teh, K., & Biggs, P. (2017).
Next Generation Sequencing reveals the seasonal variation of psychrotrophic bacteria in New Zealand raw milk. Poster session presented at the meeting of New Zealand Microbiological Society Conference
[Conference Poster]Authored by: Biggs, P., Flint, S.Contributed to by: Flint, S.Burgess, SA., Aplin, J., Biggs, P., Benschop, J., & Midwinter, A. (2017, December). New Zealand dairy cattle – a reservoir for antimicrobial resistant Serratia spp. Presented at
One Health Aotearoa 3rd Symposium. Wellington, New Zealand.
[Conference Oral Presentation]Authored by: Benschop, J., Biggs, P., Burgess, S., Midwinter, A.Wilkinson, D., Nisa, S., Haake, N., Biggs, P., French, N., Collins-Emerson, JM., . . . Benschop, J. (2017). Scalable comparative genomics to address key questions for modern leptospirosis research in New Zealand. , 10th International Leptospirosis society conference
[Conference Abstract]Authored by: Benschop, J., Biggs, P., Collins-Emerson, J., French, N.Bohorquez, J., McLenachan, PA., Johansen, R., Archer, R., Stephens, J., Biggs, PJ., . . . Robertson, AW. (2017, December). The root system of mānuka: a host for a richly diverse and variable mycorrhizal fungal community. Presented at
2017 New Zealand Molecular Ecology Conference. The Catlins, Suthland.
[Conference Oral Presentation]Authored by: Archer, R., Biggs, P., McLenachan, P., Millner, J., Robertson, A.Read Abstract:
Wheeler, N., Biggs, PJ., Blackmore, T., Reynolds, A., Midwinter, A., Marshall, J., . . . French, N. (2017). Identification of genomic changes associated with invasiveness in campylobacter jejuni. , 19th International workshop on campylobacter, Helicobacter and related organisms
[Conference Abstract]Authored by: Biggs, P., French, N., Marshall, J., Midwinter, A.cornelius, A., Tilmanne, A., Martiny, D., On, S., French, N., Lin, S., . . . Biggs, PJ. (2017). The role of emerging epsilonproteobacteria in childhood gastroenteritis. , 19th International workshop on campylobacter, helicobacter and related organisms
[Conference Abstract]Authored by: Biggs, P., French, N.Cornelius, A., Vandenberg, O., On, S., French, N., Wheeler, N., Lin, S., . . . Biggs, PJ. (2017). Using pan-genomes for molecular assay design: development of a multiplex ligation-dependent probe amplification (MLPA) assay for the detection of 28epsilonproteobacterial taxa. , 19th International workshop on campylobacter, helicobacter and related organisms
[Conference Abstract]Authored by: Biggs, P., French, N.Cornelius, A., Biggs, PJ., Hayman, D., French, N., Draper, J., Wilkinson, D., . . . Gilpin, B. (2017). use of genotyping tools to characterise and investigate the New Zealand Havelock North campylobacteriosis outbreak. , 19th international workshop on campylobacter, helicobacter and related organisms
[Conference Abstract]Authored by: Biggs, P., French, N., Hayman, D., Marshall, J., Midwinter, A.Read Abstract:
Zhang, J., Biggs, P., Wilkinson, D., Midwinter, A., Gilpin, B., Draper, J., . . . French, N. (2017, September). Ad hoc whole-genome MLST (wgMLST) analysis reveals multiple Campylobacter jejuni clones caused a massive waterborne outbreak in New Zealand in 2016. Presented at
19th International Workshop on Campylobacter, Helicobacter and Related Organisms. Nantes, France.
[Conference Oral Presentation]Authored by: Biggs, P., French, N., Hayman, D., Midwinter, A., Zhang, J.Read Abstract:
Wilkinson, DA., Zhang, J., Biggs, P., Marshall, J., & French, N. (2017).
How open is the Campylobacter genome?. Poster session presented at the meeting of CHRO 2017. Nantes, France
[Conference Poster]Authored by: Biggs, P., French, N., Marshall, J.Read Abstract:
Gates, MC., Dwyer, C., Grinberg, A., & Biggs, P. (2017, July). Mastitis Mayhem: an on-farm exercise for integrating epidemiology into clinical skills training. Presented at
ANCVS Science Week. Gold Coast Australia.
[Conference Oral Presentation]Authored by: Biggs, P., Gates, M., Grinberg, A.Read Abstract:
Yan, J., Dukkipati, VSR., Blair, HT., Biggs, PJ., Hamie, JC., & Greer, A. (2017).
A genome-wide scan of positive selection signature using Ovine Infinium® HD SNP BeadChip in two Romney lines, selected for resistance or resilience to nematodes. Poster session presented at the meeting of 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics. Townsville, QLD, Australia
[Conference Poster]Authored by: Biggs, P., Blair, H., Dukkipati, V.Read article at Massey Research Online:
Read Abstract:
Yan, J., Dukkipati, VSR., Blair, HT., Biggs, PJ., Hamie, JC., & Greer, A. (2017). A genome-wide scan of positive selection signature using Ovine Infinium® HD SNP BeadChip in two Romney lines, selected for resistance or resilience to nematodes.
Proceedings of the Association for the Advancement of Animal Breeding and Genetics. Vol. 22 (pp. 1 - 4). : 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics
[Conference Paper in Published Proceedings]Authored by: Biggs, P., Blair, H., Dukkipati, V.Read Abstract:
Robertson, AW., Bohorquez, J., Archer, R., Stephens, J., Biggs, P., & Millner, J.
Companion Biota. . Massey University, Palmerston North
[Conference Paper]Authored by: Archer, R., Biggs, P., Millner, J., Robertson, A.Read Abstract:
Purcell, R., Visnovska, M., Biggs, P., Schmeier, S., & Frizelle, F.(2017, June). Consensus molecular classification of colorectal cancer and association with the colonic microbiome.
Diseases of the Colon and Rectum. 60
(6)(pp. E90 - E91). 0012-3706.
[Conference]Authored by: Biggs, P., Schmeier, S.Biggs, PJ.(2017, February). eResearch 2017 conference.
.
[Conference]Authored by: Biggs, P.Wierenga, JR., Gedye, K., Kalema-Zikusoka, G., Valdivia, W., Hall, R., Biggs, PB., . . . Hayman, DTS. (2016, December). Metagenomic studies of infection transmission between multiple species in rural Uganda. Presented at
One Health Ecohealth 2016 Conference. Melbourne, Australia.
[Conference Oral Presentation]Authored by: Biggs, P., Gedye, K., Hayman, D., Wierenga, J.Read Abstract:
Sammarro, M., Friedrich, A., Marshall, J., Biggs, P., French, N., & Vignes, MCL.
Revealing the genetic basis for host-pathogen interaction using machine learning. Paper presented at the meeting of JOURNÉES OUVERTES DE BIOLOGIE INFORMATIQUE & MATHÉMATIQUES. Lyon, France
[Conference Paper]Authored by: Biggs, P., French, N., Marshall, J., Vignes, M.Zhang, D., Palmer, J., Lindsay, D., Teh, KH., & Flint, SH.(2016, November). Isolation, identification and characterization of heat resistant enzyme producing psychrotrophs from raw milk using MALDI-TOF mass spectrometry and high-throughput 16S DNA sequencing.
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[Conference]Authored by: Biggs, P., Flint, S.Burgess, SA., Flint, SH., Lindsay, D., & Biggs, PJ. (2016, October). Genomic insight into the adaptation of Geobacillus stearothermophilus to a milk powder. Presented at
Omics Symposium V. Christchurch, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P., Burgess, S., Flint, S.Browne, A., Midwinter, A., Withers, H., Cookson, A., Biggs, P., Marshall, J., . . . French, N. (2016). Epidemiology of shiga toxin-producing E. coli (STEC) on New Zealand dairy farms using new molecular and genomic technologies.
2016 Proceedings of Food Safety, Animal Welfare and Biosecurity Branch of the NZVA Conference. (pp. 21 - 25). Palmerston North, New Zealand: Food Safety, Animal Welfare and Biosecurity Branch of the New Zealand Veternary Animal Science Conference
[Conference Paper in Published Proceedings]Authored by: Benschop, J., Biggs, P., French, N., Marshall, J., Midwinter, A.Read Abstract:
Sammarro, M., Schrefheere, A., Biggs, P., marshall, J., Tate, J., Cox, M., . . . Vignes, MCL. (2016).
Challenges and leads for modelling complex molecular biological systems. Poster session presented at the meeting of Complex Networks and Applications 2016 workshop. Marseilles, France
[Conference Poster]Authored by: Biggs, P., Cox, M., French, N., Marshall, J., Tate, J., Vignes, M.Read Abstract:
Flint, SH., Biggs, P., & Burgess, SA. (2015, November). Genomic insights into the adaptation of Geobacillus stearothermophilus to a milk powder manufacturing plant. Presented at
New Zealand Microbiological Society Conference. Rotorua, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P., Burgess, S., Flint, S.Burgess, S., Flint, SH., Lindsay, D., & Biggs, P.(2015, November). Genomic insights into the adaptation of Geobacillus stearothermophilus to a milk powder manufacturing plant.
. (pp. 27 - 27).
[Conference]Authored by: Biggs, P., Flint, S.French, NP., Biggs, R., Biggs, PJ., Bloomfield, S., Dyet, K., Gilpin, BJ., . . . Williamson, DE. (2015). Rapid emergence of tetracycline and fluoroquinolone resistant Campylobacter jejuni ST-6964 in poultry and humans in New Zealand.
Campylobacter, Helicobacter & Related Organisms (CHRO) : 18th International Workshop 2015, 1-5 November 2015, Rotorua, New Zealand : delegate handbook. (pp. 109 - 109). : 18th International Conference on Campylobacter, Helicobacter, and Related Organisms
[Conference Paper in Published Proceedings]Authored by: Biggs, P., French, N., Midwinter, A.Read Abstract:
Bloomfield, S., Benschop, J., Midwinter, AC., Biggs, P., Marshall, J., Hayman, D., . . . French, N. (2015). Evolution of Campylobacter in a persistently infected human host. : 18th International Conference on Campylobacter, Helicobacter, and Related Organisms
[Conference Paper in Published Proceedings]Authored by: Benschop, J., Biggs, P., French, N., Hayman, D., Marshall, J., Midwinter, A.Biggs, PJ., Blackmore, T., Reynolds, AD., Midwinter, AC., & French, NP. (2015). Comparative genomic analysis of human bacteraemic Campylobacter jejuni isolates from New Zealand.
Proceedings of the 18th International workshop on Campylobacter, Helicobacter & Related Organisms - CHRO 2015. ER - .... (pp. 29 - 29). : 18th International Conference on Campylobacter, Helicobacter, and Related Organisms
[Conference Paper in Published Proceedings]Authored by: Biggs, P., French, N., Midwinter, A.Bojanic, K., Midwinter, AC., Biggs, PJ., Marshall, JC., & Acke, E. (2015). Pathogenicity of Campylobacter jejuni, C. upsaliensis and C. helveticus in the invertebrate disease model Galleria mellonella.
Proceedings of the 18th International workshop on Campylobacter, Helicobacter & Related Organisms. (pp. 38 - 38). New Zealand: 18th International Conference on Campylobacter, Helicobacter, and Related Organisms
[Conference Paper in Published Proceedings]Authored by: Biggs, P., Marshall, J., Midwinter, A.Contributed to by: Midwinter, A.Friedrich, A., Marshall, JC., Biggs, PJ., Midwinter, AC., & French, NP. (2015).
Short-term evolutionary dynamics of Campylobacter jejuni in chickens. Poster session presented at the meeting of 18th International workshop on Campylobacter, Helicobacter and Related Organisms. Rotorua, New Zealand
[Conference Poster]Authored by: Biggs, P., French, N., Marshall, J., Midwinter, A.Collins-Emerson, JM., Biggs, P., Benschop, J., Heuer, C., & Wilson, P. (2015, October). Whole genome sequence and r MLST analysis of New Zealand strains of leptospira. Presented at
9th scientific meeting of international leptospirosis society. Semarang, Indonesia.
[Conference Oral Presentation]Authored by: Benschop, J., Biggs, P., Collins-Emerson, J., Heuer, C.Collins-Emerson, J., Biggs, P., Benschop, J., Heuer, C., & Wilson, P. (2015). Whole genome sequence and rMLST analysis of New Zealand strains of Leptospira. (pp. 21 - 21). , 9th scientific meeting of international leptospirosis society
[Conference Abstract]Authored by: Benschop, J., Biggs, P., Collins-Emerson, J., Heuer, C.Pinpimai, K., Roe, W., Dittmer, K., & Biggs, P. (2015, February). Klebsiella pneumoniae in New Zealand sealions. Presented at
New Zealand Society for Veterinary Pathology Conference. Palmerston North, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P., Dittmer, K., Roe, W.Biggs, PJ., Cao, M., Jauregui, R., & Elshire, R. (2015, March). QC considerations for BBS. Presented at
eResearch NZ 2015. Queenstown, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P.Biggs, PJ., Sun, D., Jones, D., Maxwell, P., & Sturrock, S. (2015, March). An example of cross-platform collaboration. Presented at
eResearch NZ 2015. Queenstown, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P.Grange, ZL., Gartrell, B., Biggs, P., Nelson, N., & French, N. (2015).
Genomic analysis of enteric bacteria in isolated translocated wildlife populations. Poster session presented at the meeting of ZSL symposium: Health and disease in translocated wild animals
[Conference Poster]Authored by: Biggs, P., French, N., Gartrell, B.Grange, Z., Gartrell, B., Biggs, P., Nelson, N., Howe, L., & French, N. (2014, May). Use of genomic sequencing of Campylobacter for population differentiation in a translocated population of takahē (Porphyrio hochstetteri). Presented at
NCBID Molecular Diagnostics Workshop. Wellington, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P., French, N., Gartrell, B., Howe, L.Grange, ZL., Gartrell, B., Biggs, P., Nelson, N., Howe, L., & French, N. (2014, July). Population management influences Campylobacter carriage in an endangered population of takahē (Porphyrio hochstetteri). Presented at
63rd Annual International Conference of the Wildlife Disease Association: One Health Transitioning from Theory to Prctice. Albuquerque, New Mexico.
[Conference Oral Presentation]Authored by: Biggs, P., French, N., Gartrell, B., Howe, L.Edited by: Biggs, P., French, N., Gartrell, B., Howe, L.Friedrich, A., Biggs, P., Midwinter, A., & French, N. (2013, September). Use of microarrays to identify phenotypic variation in specific sequence types of Campylobacter jejuni. Presented at
17th International Workshop on Campylobacter, Helicobacter and Related Organisms. Aberdeen, Scotland.
[Conference Oral Presentation]Authored by: Biggs, P., French, N., Midwinter, A.Bojanic, K., Midwinter, A., Marshall, J., Biggs, P., Benschop, J., & Acke, E. (2013, September). Comparison of culture methods for campylobacter spp. in working farm dogs and their home-kill meat diets. Presented at
17th International Workshop on Campylobacter, Helicobacter and related organisms. Aberdeen, United Kingdom.
[Conference Oral Presentation]Authored by: Benschop, J., Biggs, P., Marshall, J., Midwinter, A.Binney, B., Biggs, P., Carter, P., Holland, B., Marshall, J., & French, N. (2013, September). Carbon utilisation in campylobacter jejuni is affected by temperature and host generalist or specialist lifestlye. Presented at
17th International workshop on Campylobacter, Helicobacter and related organisms. Aberdeen, Scotland.
[Conference Oral Presentation]Authored by: Biggs, P., French, N., Marshall, J.Biggs, PJ., Collins-Emerson, J., Midwinter, A., Fearnhead, P., Jolley, K., Maiden, M., . . . French, N. (2013). The pathogenomics of campylobacter jejuni in New Zealand. (pp. 43 - 43). , 17th International workshop on Campylobacter, Helicobacter and related organisms: Society for General Microbiology
[Conference Abstract]Authored by: Biggs, P., Collins-Emerson, J., French, N., Midwinter, A.Grange, Z., Gartrell, B., Nelson, N., Howe, L., Biggs, P., & French, N. (2013, September). The tale of takahē translocations and bacterial biogeographic prevalence. Presented at
Wildlife Disease Association Australasian Annual Conference. Melbourne, Australia.
[Conference Oral Presentation]Authored by: Biggs, P., French, N., Gartrell, B., Howe, L.Phiri, BJ., French, NP., Rainey, PB., Stevenson, MA., Prattley, DJ., & Biggs, PJ. (2012, June). Water quality, metagenomics and the microbial community in DOC campground water. Presented at
Allan Wilson Centre Disease Ecology and Pathogen Evolution Workshop. Palmerston North, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P., French, N.Read article at Massey Research Online:
Phiri, BJ., Biggs, PJ., Prattley, DJ., Stevenson, MA., Rainey, PB., & French, NP. (2012).
Characterising the drinking water microbiome on campgrounds in New Zealand. Poster session presented at the meeting of The first Infectious Disease Research Centre symposium, Palmerston North. Palmerston North, New Zealand
[Conference Poster]Authored by: Biggs, P., French, N.Read article at Massey Research Online:
Read Abstract:
Bignell, GR., Warren, W., Seal, S., Takahashi, M., Rapley, E., Barfoot, R., . . . Stratton, M.Identification and charactarisation of the familial cylindromatosis gene..
AMERICAN JOURNAL OF HUMAN GENETICS. 67
(4)(pp. 94 - 94). 0002-9297.
[Conference]Authored by: Biggs, P.Takahashi, M., Bignell, G., Rapley, E., Seal, S., Brown, C., Biggs, P., . . . Stratton, M.Fine mapping of the gene for familial cylindromatosis..
AMERICAN JOURNAL OF HUMAN GENETICS. 65
(4)(pp. A448 - A448). 0002-9297.
[Conference]Authored by: Biggs, P.Rapley, E., Tucker, K., Collins, F., Donald, J., Friedlander, M., Peng, HQ., . . . Consortium, ITCL.Candidate regions for testicular cancer susceptibility genes.
APMIS. 106
(1)(pp. 64 - 70). 0903-4641.
[Conference]Authored by: Biggs, P.Bishop, DT., Rapley, E., Crockford, G., Biggs, P., Leahy, M., Teare, D., . . . Stratton, M.Candidate regions for testicular cancer susceptibility genes: The results of two genomic searches..
AMERICAN JOURNAL OF HUMAN GENETICS. 61
(4)(pp. A268 - A268). 0002-9297.
[Conference]Authored by: Biggs, P.Bignell, GR., Canzian, F., Shayeghi, M., Stark, M., Shugart, YY., Biggs, P., . . . Foulkes, WD.A familial non-toxic multinodular thyroid goiter locus maps to chromosome 14q but does not account for familial non-medullary thyroid cancer..
AMERICAN JOURNAL OF HUMAN GENETICS. 61
(4)(pp. A268 - A268). 0002-9297.
[Conference]Authored by: Biggs, P.Biggs, PJ., Wooster, R., Chapman, P., Ford, D., Mangion, J., Quirk, Y., . . . Stratton, MR.Hereditary and sporadic cylindromas (turban tumours) result from loss of a tumour suppressor gene at 16ql2 closely linked to D16S304.
CYTOGENETICS AND CELL GENETICS. 72
(4)(pp. 2 - 2). 0301-0171.
[Conference]Authored by: Biggs, P.McLean, D., Biggs, P., Leblanc-Maridor, M., Hall, R., French, N., Pearce, N., . . . Douwes, J. (2014). 0164 Metagenomic detection of bacteria in aerosol samples in animal slaughterhouses to develop exposure profiles for an epidemiological analysis..
Occup Environ Med. Vol. 71 Suppl 1 (pp. A21).
[Conference Paper in Published Proceedings]Authored by: Biggs, P., Douwes, J., French, N., McLean, D.Read Online:
Read Abstract:
Dukkipati, VSR., Blair, H., Biggs, P., & Murray, A. (2014). An investigation into the association of polymorphisms at selected candidate gene loci with immune parameters in sheep infected with Mycobacterium avium subspecies paratuberculosis. In
2nd JRC Workshop on Sheep Breeding and Developmental Biology: Abstracts(pp. 36 - 36). , 2nd JRC Workshop on Sheep Breeding and Developmental Biology: Massey University, New Zealand
[Conference Abstract]Authored by: Biggs, P., Blair, H., Dukkipati, V.Read Abstract:
Bojanic, K., Midwinter, AC., Biggs, P., Marshall, J., Benschop, J., Cave, N., . . . Acke, E. (2013). Salmonella,E.coli and campylobacter spp. in working farm dogs in New Zealand and their home-kill diets. In P. Angus-Cook, K. Crews, N. Dymond, N. Harding, J. Hunnam, S. Marshall, . . . V. Williams (Eds.)
Proceedings of the New Zealand Veterinary Association Annual Conference. (pp. 13 - 14). : New Zealand Veterinary Association Annual Conference, The Science Behind Veterinary Practice
[Conference Paper in Published Proceedings]Authored by: Benschop, J., Biggs, P., Cave, N., Marshall, J., Midwinter, A.Read Abstract:
Biggs, PJ., Collins-Emerson, J., Midwinter, A., Kwan, E., Fearnhead, P., & French, N. (2013). The application of ribosomal multilocus sequence typing (rMLST) in epidemiological studies. In P. Angus-Cook, K. Crews, N. Dymond, N. Harding, J. Hunnam, S. Marshall, . . . V. Williams (Eds.): New Zealand Veterinary Association Annual Conference
[Conference Paper in Published Proceedings]Authored by: Biggs, P., Collins-Emerson, J., French, N., Midwinter, A.Read Abstract:
Grange, Z., Gartrell, BD., Nelson, N., Howe, L., Biggs, P., & French, N. (2013). The tale of takahe translocations and bacterial biogeographic prevalence.
Wildlife disease Association Australasian Section Conference. : Wildlife disease Association Australasian Section Conference Proceedings
[Conference Paper in Published Proceedings]Authored by: Biggs, P., French, N., Gartrell, B., Howe, L.Contributed to by: Gartrell, B.Read Abstract:
Bojanic, K., Midwinter, A., Biggs, P., Benschop, J., Cave, N., & Acke, E.(2013, February 18). Salmonella E.Coli and Campylobacter SPP. in working farm dogs in New Zealand and their home-kill diets. In
8th International Sheep Veterinary Congress: Handbook(pp. 70 - 70). , 8th International Sheep Veterinary Congress: Connecting Sheep and Science New Zealand: International Sheep Veterinary Congress
[Conference Abstract]Authored by: Benschop, J., Biggs, P., Cave, N., Midwinter, A.Read Abstract:
Bojanic, K., Midwinter, A., Biggs, P., Benschop, J., Cave, N., & Acke, E. (2013, February). Salmonella E.Coli and Campylobacter SPP. in working farm dogs in New Zealand and their home-kill diets. Presented at
8th International Sheep Veterinary Congress: Connecting Sheep and Science. Rotorua, New Zealand.
[Conference Oral Presentation]Authored by: Benschop, J., Biggs, P., Cave, N., Midwinter, A.Read Abstract:
French, N., Biggs, P., & Marshall, J. (2012). From takahe and microarrays to the Reverent Bayes - the work of the molecular epidemiology and public health laboratory(mEpiLab). In
First Infectious Disease Research Centre [IDReC] Science Symposium: Delegate Handbook(pp. 18). , First Infectious Disease Research Centre [IDReC] Science Symposium New Zealand: Infectious Disease Research Centre, Massey University
[Conference Abstract]Authored by: Biggs, P., French, N., Marshall, J.Read Abstract:
French, N., Biggs, P., & Marshall, J. (2012, October). From takahe and microarrays to the Reverend Bayes - the work of the molecular epidemiology and public health laboratory (mEpiLab). Presented at
First Infectious Disease Research Centre [IDReC] Science Symposium. Palmerston North, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P., French, N., Marshall, J.Read Abstract:
Vaughan, T., Cox, M., Biggs, P., Drummond, A., & French, N. (2012). Demographic histories of host-associated campylobacter populations in New Zealand. In
First Infectious Disease Research Centre [IDReC] Science Symposium: Delegate Handbook(pp. 72 - 72). , First Infectious Disease Research Centre [IDReC] Science Symposium New Zealand: Infectious Disease Research Centre, Massey University
[Conference Abstract]Authored by: Biggs, P., Cox, M., French, N.Read Abstract:
Yu, S., Fearnhead, P., Holland, BR., Biggs, P., & French, N. (2012). Investigating the impact of geographical isolation on the evolution of campylobacter by comparing New Zealand and United Kingdom datasets. In
First Infectious Disease Research Centre [IDReC] Science Symposium: Delegate Handbook(pp. 71 - 71). , First Infectious Disease Research Centre [IDReC] Science Symposium Palmerston North, New Zealand: Infectious Disease Research Centre, Massey University
[Conference Abstract]Authored by: Biggs, P., French, N.Read Abstract:
Phiri, BJ., Biggs, P., Prattley, D., Stevenson, MA., Rainey, PB., & French, N. (2012). Characterising the drinking water microbiome on campgrounds in New Zealand. In
First Infectious Disease Research Centre [IDReC] Science Symposium: Delegate Handbook(pp. 64 - 64). , First Infectious Disease Research Centre [IDReC] Science Symposium New Zealand: Infectious Disease Research Centre, MAssey University
[Conference Abstract]Authored by: Biggs, P., French, N.Read Abstract:
Grinberg, A., Biggs, PJ., Dukkipati, RS., & George, TT. (2012). Are cryptosporidium parvum isolates genetic microcosms of local populations of origin?. In
First Infectious Disease Research Centre [IDReC] Science Symposium: Delegate Handbook(pp. 54 - 54). , First Infectious Disease Research Centre [IDReC] Science Symposium New Zealand: Infectious Disease Research Centre, Massey University
[Conference Abstract]Authored by: Biggs, P., Dukkipati, V., Grinberg, A.Read Abstract:
George, T., Midwinter, AC., Biggs, P., Cookson, A., & French, N. (2012). Pheno-genotypic characterisation of New Zealand associated Escherishia coli O157:H7 isolates. In
First Infectious Disease Research Centre [IDReC] Science Symposium: Delegate Handbook(pp. 51 - 51). , First Infectious Disease Research Centre [IDReC] Science Symposium New Zealand: Infectious Disease Research Centre, Massey University
[Conference Abstract]Authored by: Biggs, P., French, N., Midwinter, A.Read Abstract:
Bojanic, K., Midwinter, A., Rogers, LE., Biggs, P., & Acke, E. (2012). Prospect® Campylobacter microplate assay detection of C upsaliensis, C helveticus and C hyointestinalis in spiked human clinical faecal samples. In
First Infectious Disease Research Centre [IDReC] Science Symposium: Delegate Handbook(pp. 44 - 44). , First Infectious Disease Research Centre [IDReC] Science Symposium New Zealand: Infectious Disease Research Centre, Massey University
[Conference Abstract]Authored by: Biggs, P., Midwinter, A.Read Abstract:
Binney, BM., Bigg, PJ., Carter, PE., Holland, BR., & French, N. (2012). A preliminary examination of the relationship between host-association, temperature and phentotype for genetically characterised strains of Campylobacter jejnui. In
First Infectious Disease Research Centre [IDReC] Science Symposium: Delegate Handbook(pp. 42 - 42). , First Infectious Disease Research Centre [IDReC] Science Symposium New Zealand: Infectious Disease REsearch Centre, Massey University
[Conference Abstract]Authored by: Biggs, P., French, N.Edited by: Biggs, P.Read Abstract:
Biggs, P., Jolley, KA., Maiden, MCJ., Cody, AJ., & French, N. (2012, August). The pathogenomics of Campylobacter jejuni at the at the "micro" and "macro" scale. Presented at
Queenstown Molecular Biology Meeting (QMB). Queenstown, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P., French, N.Biggs, P. (2012, October). Genomic epidemiology and public health. Presented at
The First Infectious Disease Research Centre [IDReC] Symposium. Palmerston North, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P.Biggs, P., & Grinberg, A. (2012). An overview of next generation sequencing technologies with a focus on protist research. In
4th International Giardia and Cryptosporidium Conference: Abstracts(pp. 62 - 62). , 4th International Giardia and Cryptosporidium Conference New Zealand: Massey University
[Conference Abstract]Authored by: Biggs, P., Grinberg, A.Read Abstract:
Biggs, P., & Grinberg, A. (2012, January). An overview of next generation sequencing technologies with a focus on protist research. Presented at
4th International Giardia & Cryptosporidium Conference. Wellington, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P.Read Abstract:
Balm, M., Collins-Emerson, J., Midwinter, A., Biggs, P., & French, N. (2012).
Host association and evolution of Campylobacter species in native rails: An endeavour teacher fellowship experience. Poster session presented at the meeting of First Infectious Disease Research Centre [IDReC] Science Symposium. Palmerston North, New Zealand
[Conference Poster]Authored by: Biggs, P., Collins-Emerson, J., French, N., Midwinter, A.Read Abstract:
Grinberg, A., Dukkipati, R., Biggs, P., & George, T. (2012, January). Are cryptosporidium parvum 'isolates' genetic microcosms?. Presented at
IV International Giardia and Cryptosporidium Conference. Wellington, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P., Dukkipati, V., Grinberg, A.Read Abstract:
Grinberg, A., Dukkipati, R., Biggs, P., & George, T. (2012). Are cryptosporidium parvum 'isolates' genetic microcosms?. In
IV International Giardia and Cryptosporidium Conference: Conference Abstracts on CD(pp. 22 - 22). , IV International Giardia and Cryptosporidium Conference New Zealand: Massey University
[Conference Abstract]Authored by: Biggs, P., Dukkipati, V., Grinberg, A.Read Abstract:
Dunowska, M., Biggs, PJ., Perrott, M., Giles, J., & Zheng, T. (2012). What makes the possums wobbly?. In
Institute of Veterinary, Animal and Biomedical Sciences [IVABS] Research Colloquium: Programme and Abstracts(pp. 4 - 4). , Institute of Veterinary, Animal and Biomedical Sciences [IVABS] Research Colloquium New Zealand: Institute of Veterinary, Animal and Biomedical Sciences, Massey University
[Conference Abstract]Authored by: Biggs, P., Dunowska, M., Perrott, M.Read Abstract:
Vaughan, T., Cox, M., Biggs, P., Drummond, A., & French, N. (2012, October). Non-parametric inference of the demographic history of host-associated Campylobacter in New Zealand. Presented at
Allan Wilson Centre for Molecular Ecology and Evolution Annual Meeting 2012. Palmerston North, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P., Cox, M., French, N.Read Abstract:
Vaughan, T., Cox, M., Biggs, P., Drummond, A., & French, N. (2012). Non-parametric inference of the demographic history of host-associated Campylobacter in New Zealand. In
Allan Wilson Centre for Molecular Ecology and Evolution Annual Meeting: Abstracts of Meeting Speakers(pp. 14 - 14). , Allan Wilson Centre for Molecular Ecology and Evolution Annual Meeting 2012 New Zealand: Allan Wilson Centre, Massey University
[Conference Abstract]Authored by: Biggs, P., French, N.Read Abstract:
Biggs, P., Hotter, G., Mohan, V., Collins-Emerson, J., Kwan, E., Besser, TE., . . . French, N. (2012, October). The pathogenomics of Campylobacter jejuni at the 'micro' and 'macro' scale. Presented at
Allan Wilson Centre for Molecular Ecology and Evolution Annual Meeting 2012. Palmerston North, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P., Collins-Emerson, J., French, N.Read Abstract:
Biggs, P., Hotter, G., Mohan, V., Collins-Emerson, J., Kwan, E., Besser, TE., . . . French, N. (2012). The pathogenomics of Campylobacter jejuni at the 'micro' and 'macro' scale. In
Allan Wilson Centre for Molecular Ecology and Evolution Annual Meeting: Abstracts of Meeting Speakers(pp. 9 - 9). , Allan Wilson Centre for Molecular Ecology and Evolution Annual Meeting 2012 New Zealand: Allan Wilson Centre, Massey University
[Conference Abstract]Authored by: Biggs, P., Collins-Emerson, J., French, N.Read Abstract:
Dunowska, M., McBrearty, K., Biggs, PJ., & Murray, A. (2012).
Survey of equine respiratory viruses in New Zealand. Poster session presented at the meeting of IX International Congress of Veterinary Virology and joint meeting with the European Society of Clinical Virology (ESVV 2012)- One world, One Health, One Virology. Madrid, Spain
[Conference Poster]Authored by: Biggs, P., Dunowska, M.Read Abstract:
Dunowska, M., Biggs, PJ., & Perrott, M. (2012, September). Genomic characterisation of a new nidovirus associated with a neurological disease of possums. Presented at
IX International Congress of Veterinary Virology and joint meeting with the European Society of Clinical Virology [ESVV 2012]: One world, One Health, One Virology. Madrid, Spain.
[Conference Oral Presentation]Authored by: Biggs, P., Dunowska, M., Perrott, M.Read Abstract:
Dunowska, M., McBrearty, K., Biggs, PJ., & Murray, A. (2012, October). Survey of equine respiratory viruses in New Zealand. Presented at
First Infectious Disease Research Centre (IDReC) Science Symposium. Palmerston North, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P., Dunowska, M.Read Abstract:
Dunowska, M., McBrearty, K., Biggs, PJ., & Murray, A. (2012). Survey of equine respiratory viruses in New Zealand. In
First Infectious Disease Research Centre (IDReC) Science Symposium- Delegate Handbook(pp. 47 - 47). , First Infectious Disease Research Centre (IDReC) Science Symposium New Zealand: Infectious Disease Research Centre, Massey University
[Conference Abstract]Authored by: Biggs, P., Dunowska, M.Read Abstract:
Dunowska, M., Biggs, PJ., & Perrott, M. (2012). Genomic characterisation of a new nidovirus associated with a neurological disease of possums. In
Final Program and Abstract Book- IX International Congress of Veterinary Virology and joint meeting with the European Society of Clinical Virology (ESVV 2012)(pp. 71 - 71). , IX International Congress of Veterinary Virology and joint meeting with the European Society of Clinical Virology [ESVV 2012]: One world, One Health, One Virology Spain: European Society for Veterinary Virology
[Conference Abstract]Authored by: Biggs, P., Dunowska, M., Perrott, M.Read Abstract:
Dunowska, M., McBrearty, K., Biggs, PJ., & Murray, A. (2012). Survey of equine respiratory viruses in New Zealand. In
Final Program and Abstract Book- IX International Congress of Veterinary Virology and joint meeting with the European Society of Clinical Virology (ESVV 2012)(pp. 156 - 157). , IX International Congress of Veterinary Virology and joint meeting with the European Society of Clinical Virology (ESVV 2012)- One world, One Health, One Virology Spain: Veterinary Faculty, Complutense University of Madrid
[Conference Abstract]Authored by: Biggs, P., Dunowska, M.Read Abstract:
Yu, S., Fearnhead, P., Holland, BR., Biggs, P., Maiden, M., & French, N. (2012). Estimating the Relative Roles of Recombination and Point Mutation in the Generation of Single Locus Variants in Campylobacter jejuni and Campylobacter coli. In
Journal of Molecular Evolution(pp. 1 - 8).
[Conference Abstract]Authored by: Biggs, P., French, N.Read Abstract:
Dunowska, M., Biggs, PJ., Zheng, T., & Perrott, MR. (2011). Identification of a novel nidovirus associated with a neurological disease of the Australian brushtail possum (Trichosurus vulpecula). In
Veterinary Microbiology
[Conference Abstract]Authored by: Biggs, P., Dunowska, M., Perrott, M.Read Abstract:
French, N., Collins-Emerson, JM., Midwinter, A., Biggs, P., Mohan, V., Muellner, P., . . . Carter, P. (2011, November). The evolution, epidemiology and control of enteric zoonoses in New Zealand. Presented at
New Zealand Microbiological Society Conference 2011. Palmerston North, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P., Collins-Emerson, J., French, N., Midwinter, A.Read Abstract:
French, N., Collins-Emerson, JM., Midwinter, A., Biggs, P., Mohan, V., Muellner, P., . . . Carter, P.(2011, November 23). The evolution, epidemiology and control of enertic zoonoses in New Zealand. (pp. 128 - 128). , New Zealand Microbiological Society Conference 2011
[Conference Abstract]Authored by: Biggs, P., Collins-Emerson, J., Midwinter, A.Read Abstract:
Biggs, PJ., Collins-Emerson, J., Friedrich, A., Kwan, E., Midwinter, A., & French, NP.(2011, November 23). The movement of DNA in and out of Campylobacter spp.- CRISPRs and the analysis of full length MLST genes. (pp. 96 - 96). , New Zealand Microbiological Society Conference 2011
[Conference Abstract]Authored by: Biggs, P., Collins-Emerson, J., French, N., Midwinter, A.Read Abstract:
Biggs, PJ., Collins-Emerson, J., Friedrich, A., Kwan, E., Midwinter, A., & French, NP. (2011, November). The movement of DNA in and out of Campylobacter spp.- CRISPRs and the analysis of full length MLST genes. Presented at
New Zealand Microbiological Society Conference 2011. Palmerston North, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P., Collins-Emerson, J., French, N., Midwinter, A.Read Abstract:
Dunowska, M., Biggs, PJ., Zheng, T., & Perrott, MRF. (2011, December). Indentification of a novel nidovirus associated with a neurological disease of the Australian brushtail possum (Trichosurus vulpecula). Presented at
6th Australasian Virology Society Meeting. Kingscliff, New South Wales, Australia.
[Conference Oral Presentation]Authored by: Biggs, P., Dunowska, M., Perrott, M.Read Abstract:
Collins, DM., Kawakami, RP., Wards BJ, ., Biggs, PJ., Hotter, GS., & de Lisle, GW.(2011, September 15). Emulating mutations of a random mutant of Mycobacterium bovis with better tuberculosis vaccine efficacy than BCG. (pp. 22 - 22). , Webster Centre Symposium 2011-Webster Centre for Infectious Diseases
[Conference Abstract]Authored by: Biggs, P.Read Abstract:
Biggs, PJ., Collins-Emerson, J., Holland, B., Carter, P., Cookson, A., Fearnhead, P., . . . French, N. (2011, April). Campylobacter spp. in New Zealand: the evolution of an important human pathogen in an island ecosystem. Presented at
Hopkirk Research Institute Seminar. Palmerston North, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P., Collins-Emerson, J., French, N.Read Abstract:
Biggs, PJ. (2011, August). Introduction to the main NGS platforms. Presented at
Advanced Workshop 3rd Annual Next Generation Sequencing Conference. Palmerston North, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P.Cookson, A., Biggs, PJ., Hotter, G., Fearnhead, P., Carter, P., & French, N. (2011).
Recombination events associated with Campylobacter jejuni ST-474 drive clonal diversity, population structure and evolution. Poster session presented at the meeting of 16th International Workshop on Campylobacter, Helicobacter and Related Organisms. Vancouver, Canada
[Conference Poster]Authored by: Biggs, P., French, N.Read Abstract:
Carter, P., Collins-Emerson, JM., Midwinter, A., Cookson, A., Biggs, P., & French, N. (2011).
A new campylobacter species identified in water and wild birds (Rallidae) in New Zealand. Poster session presented at the meeting of 16th International Workshop on Campylobacter, Helicobacter and Related Organisms. Vancouver, Canada
[Conference Poster]Authored by: Biggs, P., Collins-Emerson, J., French, N., Midwinter, A.Read Abstract:
Murray, PC., Peterson, DA., & Biggs, PJ. (2010, April). SolexaQA: At-a-glance quality assessment of Illumina second generation sequencing data. Presented at
2010 Illumina User Symposium. Napa Valley, CA, United States.
[Conference Oral Presentation]Authored by: Biggs, P.Biggs, PJ., Hotter, G., Mohan, V., Collins-Emerson, J., Kwan, E., Besser, TE., . . . French, N.(2010, April 27). New insight gained from a whole-genome comparison of two Campylobacter jejuni isolates that were indistinguishable on the basis of multilocus genotyping. , Molecular Diagnostics Workshop: MAF Biosecurity New Zealand
[Conference Abstract]Authored by: Biggs, P., Collins-Emerson, J., French, N.Read Abstract:
Biggs, PJ., Hotter, G., Mohan, V., Collins-Emerson, J., Kwan, E., Besser, TE., . . . French, NP. (2010, April). New insight gained from a whole-genome comparison of two campylobacter jejuni isolates that were indistinguishable on the basis of multilocus genotyping. Presented at
Molecular Diagnostics Workshop. Upper Hutt, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P., Collins-Emerson, J., French, N.Biggs, PJ., Collins-Emerson, J., Holland, B., Carter, P., Cookson, A., Fearnhead, P., . . . French, N. (2010, August). Campylobacter spp. in New Zealand: the evolution of an important human pathogen in an island ecosystem. Presented at
New Zealand Next Generation Sequencing 2010 Meeting. Dunedin, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P., Collins-Emerson, J., French, N.Read Abstract:
Biggs, PJ., Collins, LJ., Xiaowei Chen, S., & French, NP. (2008).
Practical evolutionary genomics from short-read sequence experiments. Poster session presented at the meeting of The 19th International Conference on Genome Informatics. Surfers Paradise, Queensland, Australia
[Conference Poster]Authored by: Biggs, P., French, N.Read Abstract:
Collins, LJ., Biggs, PJ., Voelckel, C., & Joly, S. (2008). An approach to transcriptome analysis of non-model organisms using short-read sequences..
Genome informatics. International Conference on Genome Informatics. Vol. 21 (pp. 3 - 14).
[Conference Paper in Published Proceedings]Authored by: Biggs, P.Read Abstract:
Han, J., Collins, LJ., Biggs, PJ., & Penny, D. (2008).
Eukaryotic Signature Proteins Guides to modern eukaryotic Parasites. Poster session presented at the meeting of 19th International Conference on Genome Informatics GIW 2008. Surfers Paradise, QLD, Australia
[Conference Poster]Authored by: Biggs, P.Penny, ED., Gibb, GC., Collins, LJ., & Biggs, PJ. (2008, June). Mass generation of new sequences and analysis. Presented at
Evolution 2008. Minneapolis, Minnesota, United States of America.
[Conference Oral Presentation]Authored by: Biggs, P.Biggs, PJ., & Collins, L. (2007, November). Next generation sequencing at the Allan Wilson Centre. Presented at
3rd New Zealand Molecular Mapping Workshop 2007. Hamilton, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P.view less...
